HsaALTD1001131-2/5 @ hg38
Alternative 5'ss
Gene
ENSG00000013441 | CLK1
Description
CDC like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:200861702-200864252:-
Coord C1 exon
chr2:200864140-200864252
Coord A exon
chr2:200864101-200864139
Coord C2 exon
chr2:200861702-200861862
Length
39 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
AAAACTTGCCTTTTATGTAGATG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTGAACCGCCTCGGCGGAGCTGTAAGATGGCGGCTGGGCGGAGGCCGGCTTCGGCCCTGTGGCCGGAAAGGCGAGGCTCCCCGTTGAGGGGGGATTTGCTGGGGTTCCAGAAT
Seq A exon
GTGCGTGAGCCAAGCAGCTGTGGGGAAACGTTGTCTGGA
Seq C2 exon
ATGAGACACTCAAAGAGAACTTACTGTCCTGATTGGGATGACAAGGATTGGGATTATGGAAAATGGAGGAGCAGCAGCAGTCATAAAAGAAGGAAGAGATCACATAGCAGTGCCCAGGAGAACAAGCGCTGCAAATACAATCACTCTAAAATGTGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013441-1-4,2-4,3-4,4-4,5-4-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105774=UPF0560=PU(25.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGATTTGCTGGGGTTC
R:
TTTATGACTGCTGCTGCTCCT
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains