HsaALTD1003503-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000067992 | PDK3
Description
pyruvate dehydrogenase kinase 3 [Source:HGNC Symbol;Acc:HGNC:8811]
Coordinates
chrX:24494742-24498900:+
Coord C1 exon
chrX:24494742-24494883
Coord A exon
NA
Coord C2 exon
chrX:24498829-24498900
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTTTTTTTTTTCCTTTTAGGTA
3' ss Score
13.95
Exon sequences
Seq C1 exon
GGAGAGATAATGCATGTGAGAAAACTTCATATATGTTTCTACGAAAGGAACTTCCTGTGCGGCTGGCTAACACAATGAGAGAAGTTAATCTTCTGCCGGATAATTTACTTAACCGCCCTTCAGTGGGATTGGTTCAGAGTTG
Seq A exon
NA
Seq C2 exon
GTATATGCAGAGTTTTCTTGAACTTTTAGAATATGAAAATAAGAGCCCTGAGGATCCACAGGTCTTGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067992-6-10,7-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
NA
C2:
PF104364=BCDHK_Adom3=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTTCCTGTGCGGCTG
R:
TATCCAAGACCTGTGGATCCTCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains