HsaALTD1004003-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170452348-170463445:+
Coord C1 exon
chr2:170452348-170462952
Coord A exon
chr2:170462953-170463272
Coord C2 exon
chr2:170463368-170463445
Length
320 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GCCTCCACCTATGCTTCCAGGTG
3' ss Score
8.67
Exon sequences
Seq C1 exon
CCTCCTAACTCTCACCCCTTTTAGCACCAGTTTTTCACTTTCATTGAACAAGGCTGCAGACATCCTCACCCCATGGGAAGGTGGCTGCCTGGACGGCAGTCCACCCAGCCTAACCCACATGCTGACAGCAGTGTCTTCCATCTCAAACATTTCTGCTTTATACCCTTGCCACCTGTTCAGAGCAGATGGGAAGCTGCCACGGCAAGGCCAGTGCTAAATGCCACTCATGCACTCTGCAAACCAAAGCAGGGTTTTTGTTGTTGCATTATAATAATGGAACACAGGCTGCTTGCAGTCAGCCCCTACAATTGTTTTCATCAATCAGTTCCTTTCAGTCAGCCCAGGTAGTTGGGATAGATATTGAGAACAGGTGCATTCCATTGGGTTTCCGAGTGATTTGGTGCCTGAGCTCCTATCTGCAATGAGCACATGGGAACTGTGGGTGGTAGGAGGAGTCTGATGGTTGCAGCATCAGAGTCTGACGACGTGGAAGGCAACTG
Seq A exon
GTGCTGGCCTAATTCCCTGTGGTACAACCTGGGCTTTGGGGCCATCACGTCTTTATAATCATTTCGCCTCATGGCCCTTTGCCAAGTTTCCTTTTAAGCAATAGTTTGGTCTCATATGACCTTACTGGAGAATTTAACAGGGGTTCATTAGAAGATGTAGAAGTATAGAAATAAGAGGGGTTTACACTGAAACCACATGGTATTTTATAGAGTGAGGTATTGTCAAATGAGTAGAACAATGCATATTCTTTCGTTTCTATGTTTTGAAAAATTCTCCCCACAGTATACACTATTGTGTCCTAAATACCATGGCCCCTCAG
Seq C2 exon
GTGGACACTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATGAAGAGGCAAACTGTGGCTTCTTACTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-49-49,50-49,51-49-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.064
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000408978fB20568
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCAGAGCAGATGGGA
R:
ATGCCGTATCACCTCCAGAGT
Band lengths:
357-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains