HsaALTD1004610-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56615014-56615547:-
Coord C1 exon
chr12:56615293-56615547
Coord A exon
chr12:56615219-56615292
Coord C2 exon
chr12:56615014-56615128
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
AAACCTTTGCACCCTCCCAGGAG
3' ss Score
5.98
Exon sequences
Seq C1 exon
GGATTTTGAACTCTGCTCCCCACTCCTCCAGCACCTCACACCTCCATCACCCCAGCGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAATACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCATAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACG
Seq A exon
GTACCCAGAGTCCCATGGGGCTTAACTTTGATTCACAAGAACTGTATGATTCCTTTCCTGACCAGAATTTTGAG
Seq C2 exon
GAGGTAGGCAGTGGTATCCATCCTGATGAGGCAGCAGAAAAGGAGATGACTTCAGTTGTGGCAGAGAATGGCACTGGCTTGGTAGGCAGCTTGGAGCTGGAAGAAGAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-26-25,27-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=NA C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCCACTCAACGGCATCCT
R:
GCCATTCTCTGCCACAACTGA
Band lengths:
170-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains