HsaALTD1005001-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34980578-34981060:+
Coord C1 exon
chr20:34980578-34980734
Coord A exon
chr20:34980735-34980795
Coord C2 exon
chr20:34981033-34981060
Length
61 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
3' ss Seq
TCCCCTTCCCTTTCCTCCAGACC
3' ss Score
12.48
Exon sequences
Seq C1 exon
ACCTACTCAGGCCTCTTCTGTGTCACCATCAACCCCTACAAATGGCTCCCAGTCTATACGGCCTCCGTAGTGGCTGCTTACAAGGGAAAGCGCCGCTCAGATTCCCCGCCCCATATATATGCGGTGGCGGACAACGCCTACAACGACATGCTGCGCA
Seq A exon
GTAAGGGCCGCCTGGACTCCTCCCCAACCGCAGACCCCGACCTCGGTCCCGGGAGGCCTCT
Seq C2 exon
ACCGAGACAACCAGTCCATGCTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-8-8,9-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGTCTATACGGCCTCC
R:
CAGCATGGACTGGTTGTCTCG
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains