HsaALTD1007832-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000100450 | GZMH
Description
granzyme H [Source:HGNC Symbol;Acc:HGNC:4710]
Coordinates
chr14:24606480-24607406:-
Coord C1 exon
chr14:24607341-24607406
Coord A exon
chr14:24607149-24607340
Coord C2 exon
chr14:24606480-24606746
Length
192 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
TTTCCTCTCTCTGTTCACAGGGG
3' ss Score
13.02
Exon sequences
Seq C1 exon
CTGGAGAGAAAGGCCAAGTGGACCACAGCTGTGCGGCCTCTCAGGCTACCTAGCAGCAAGGCCCAG
Seq A exon
GTGAAGCCAGGGCAGCTGTGCAGTGTGGCTGGCTGGGGTTATGTCTCAATGAGCACTTTAGCAACCACACTGCAGGAAGTGTTGCTGACAGTGCAGAAGGACTGCCAGTGTGAACGTCTCTTCCATGGCAATTACAGCAGAGCCACTGAGATTTGTGTGGGGGATCCAAAGAAGACACAGACCGGTTTCAAG
Seq C2 exon
GGGGACTCCGGGGGGCCCCTCGTGTGTAAGGACGTAGCCCAAGGTATTCTCTCCTATGGAAACAAAAAAGGGACACCTCCAGGAGTCTACATCAAGGTCTCACACTTCCTGCCCTGGATAAAGAGAACAATGAAGCGCCTCTAACAGCAGGCATGAGACTAACCTTCCTCTGGGCCTGACCATCTCTGGGACAGAGGCAAGAATCCCCAAGGGGTGGGCAGTCGGGGTTGCAGGACTGTAATAAATGGATCTCTGGTGTAAATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100450-4-4,5-4,6-4,7-4-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.8=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGAAAGGCCAAGTGGA
R:
AGGCCCAGAGGAAGGTTAGTC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains