HsaALTD1009834-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:HGNC:26129]
Coordinates
chr19:15456502-15457319:-
Coord C1 exon
chr19:15457292-15457319
Coord A exon
NA
Coord C2 exon
chr19:15456502-15456646
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TGACCTCCTGCCCTTCCTAGGCG
3' ss Score
10.17
Exon sequences
Seq C1 exon
CGTGCTGCGGGCCACCGGCCGGGCGCAG
Seq A exon
NA
Seq C2 exon
GCGCTGGTGACTGACCTGGGCACTGCGGAGCTGGCGCGCTGTGGAGGCCGTGAGGCGCTGCTGTTCCGGGAAAACACATTGGCCACCAAGGCTATCGATGAGTACATGAAGCTCGTGGCACAGGATTACCTCCAGGAGACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-15-24,16-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains