HsaALTD1010860-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000107281 | NPDC1
Description
neural proliferation, differentiation and control 1 [Source:HGNC Symbol;Acc:HGNC:7899]
Coordinates
chr9:137039470-137040067:-
Coord C1 exon
chr9:137039996-137040067
Coord A exon
NA
Coord C2 exon
chr9:137039470-137039864
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGTGTACGA
5' ss Score
-0.64
3' ss Seq
CCTGACACCCACATTCGCAGACC
3' ss Score
5.57
Exon sequences
Seq C1 exon
GCATAAAGAGCCACCCAAGGAGCTGGACACGGCCTCCTCGGATGAGGAGAATGAGGACGGAGACTTCACGGT
Seq A exon
NA
Seq C2 exon
ACCGGGGAAATGGAGGTGCGCAACCCTCTGTTCGACCACGCCGCACTGTCCGCGCCCCTGCCGGCCCCCAGCTCACCGCCTGCACTGCCATGACCTGGAGGCAGACAGACGCCCACCTGCTCCCCGACCTCGAGGCCCCCGGGGAGGGGCAGGGCCTGGAGCTTCCCACTAAAAACATGTTTTGATGCTGTGTGCTTTTGGCTGGGCCTCGGGCTCCAGGCCCTGGGACCCCTTGCCAGGGAGACCCCCGAACCTTTGTGCCAGGACACCTCCTGGTCCCCTGCACCTCTCCTGTTCGGTTTAGACCCCCAAACTGGAGGGGGCATGGAGAACCGTAGAGCGCAGGAACGGGTGGGTAATTCTAGAGACAAAAGCCAATTAAAGTCCATTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107281-21-19,22-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF068096=NPDC1=FE(10.3=100)
A:
NA
C2:
PF068096=NPDC1=PD(9.4=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAAAGAGCCACCCAAGGA
R:
CGTGGTCGAACAGAGGGTTG
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains