HsaALTD1011070-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27028852-27029356:-
Coord C1 exon
chr10:27029286-27029356
Coord A exon
NA
Coord C2 exon
chr10:27028852-27028945
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TTTTAAAATATACATTTCAGGCT
3' ss Score
5.68
Exon sequences
Seq C1 exon
TTGCAAGAAGCACAGGATCGACATACAGAAGCTGTCAGATGTGCTGAGAAGATGCAAGATCACAAGCAAAA
Seq A exon
NA
Seq C2 exon
GCTTGAAAAAGATAATGCCAAGTTAAAAGTTACAGTCAAAAAGCAAATGGACAAAATTGAGGAGCTTCAGAAAAACCTGTTAAATGCAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-57-65,58-65-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=0.398
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCACAGGATCGACA
R:
TGCATTTAACAGGTTTTTCTGAAGCT
Band lengths:
157-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains