HsaALTD1011746-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000109758 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:3445265-3446294:+
Coord C1 exon
chr4:3445265-3445350
Coord A exon
chr4:3445351-3445496
Coord C2 exon
chr4:3446042-3446294
Length
146 bp
Sequences
Splice sites
5' ss Seq
AAGGTCACG
5' ss Score
2.61
3' ss Seq
CCGGTGACCTTTGCTCCCAGAAT
3' ss Score
7
Exon sequences
Seq C1 exon
GAATCCGGACAATGACGAGAGGCCCTGGTGCTACGTGGTGAAGGACAGCGCGCTCTCCTGGGAGTACTGCCGCCTGGAGGCCTGCG
Seq A exon
GTGCGCGGCTGGCGGGGGGTGCTGCCTTGGGCCCCACCGAGGTCACAGCAGTTTTCCCCGTGATCCTCCTAGCCCCTCCGCACACCTGGCTACTGCATCTCTGACAAATGGGGAAACTGGAGCTCACGGGATCAGGCTGGTCCAAG
Seq C2 exon
AATCCCTCACCAGAGTCCAACTGTCACCGGATCTCCTGGCGACCCTGCCTGAGCCAGCCTCCCCGGGGCGCCAGGCCTGCGGCAGGAGGCACAAGAAGAGGACGTTCCTGCGGCCACGTATCATCGGCGGCTCCTCCTCGCTGCCCGGCTCGCACCCCTGGCTGGCCGCCATCTACATCGGGGACAGCTTCTGCGCCGGGAGCCTGGTCCACACCTGCTGGGTGGTGTCGGCCGCCCACTGCTTCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109758-9-15,10-15,11-15-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=93.3)
A:
NA
C2:
PF0008921=Trypsin=PU(18.8=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTACGTGGTGAAGGACAG
R:
AGCTGTCCCCGATGTAGATGG
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains