HsaALTD1013540-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42634617-42635366:+
Coord C1 exon
chr3:42634617-42634637
Coord A exon
chr3:42634638-42634700
Coord C2 exon
chr3:42635221-42635366
Length
63 bp
Sequences
Splice sites
5' ss Seq
ATTGTATGT
5' ss Score
4.34
3' ss Seq
TATTGTTTTTGTTTTTAAAGCGC
3' ss Score
7.56
Exon sequences
Seq C1 exon
ATTCCTGATGTTGCACCCATT
Seq A exon
GTAAGTGATCAGAAACCATCTGTATCAAAGTCTGGACGGAAGATTAAAGGAAGGGGCACAATT
Seq C2 exon
CGCTATCACACACCTCCAAGATCAAGATCCTGTTCTGAGTCAGATGATGATGACAGCAGTGAAACTCCTCCTCACTGGAAAGAGGAAATGCAGAGATTAAGAGCATATAGACCACCTAGTGGAGAAAAATGGAGTAAAGGAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-36-41,37-41-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF105004=SR-25=PD(4.3=23.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGATGTTGCACCCATT
R:
TGGTCTATATGCTCTTAATCTCTGCA
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains