HsaALTD1014050-4/5 @ hg38
Alternative 5'ss
Gene
ENSG00000115840 | SLC25A12
Description
solute carrier family 25 member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr2:171855834-171867103:-
Coord C1 exon
chr2:171866985-171867103
Coord A exon
chr2:171866824-171866984
Coord C2 exon
chr2:171855834-171855949
Length
161 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CGTTTTATATTTTATTCCAGGTT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCACCGCCCCGTCTGGGATGTGAGGAGCGCCTCTGCCCAGCCGCGACCCCGTCTGGGAG
Seq A exon
GTGAGGAGCGTCTCTGCCTGGCCGCCCCATCAGAGAAGTGAGGAGACCCTCCGCCTGGCAACTGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAG
Seq C2 exon
GTTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTTTTATGTGCTCCAGATTCCATGTTCATAGTGGCTTTCCAGTTGTTTGACAAGAGTGGAAATGGAGAGGTGACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115840-10-44,11-44,12-44,13-44,14-44-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134991=EF-hand_7=PD(14.5=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGAGGAGCGTCTCTGC
R:
AAATGTCACCTCTCCATTTCCACT
Band lengths:
234-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains