HsaALTD1015046-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000118898 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr16:4910850-4937064:-
Coord C1 exon
chr16:4936984-4937064
Coord A exon
chr16:4936904-4936983
Coord C2 exon
chr16:4910850-4910949
Length
80 bp
Sequences
Splice sites
5' ss Seq
AGTGTAGGA
5' ss Score
-0.97
3' ss Seq
CCCTCGGCTTCTGCCCGCAGCAT
3' ss Score
9.81
Exon sequences
Seq C1 exon
CCGCACCCCGAGCGCCACCATGAACTCGCTCTTCAGGAAGAGAAACAAAGGCAAATACAGCCCCACTGTGCAGACCCGGAG
Seq A exon
GTGAGGAGGCGCCCACAGCTCCGCTCCGGGACGCTCTTGCCCCTGTGGGCGCACAGGACCTGGAAGACCTCCCGGGCAGT
Seq C2 exon
CATCTCTAACAAGGAGCTCTCGGAGCTGATCGAGCAGCTGCAGAAGAATGCCGACCAGGTGGAGAAGAACATCGTGGACACAGAGGCCAAGATGCAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118898-2-4,3-4,4-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.451
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCATGAACTCGCTCTTC
R:
CTCTGCATCTTGGCCTCTGTG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains