HsaALTD1015874-1/6 @ hg38
Alternative 5'ss
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:19958783-19960026:+
Coord C1 exon
chr13:19958783-19958841
Coord A exon
NA
Coord C2 exon
chr13:19959958-19960026
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CTTTTTTCCTCCTATCCCAGGAC
3' ss Score
9.68
Exon sequences
Seq C1 exon
CGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCGCGGAGCCCCAGCCAGAACCGG
Seq A exon
NA
Seq C2 exon
GACCAAGAATCGCCTTCAGCCCTGTCTGGTGCATCCTTGGCAGAAAGTGAGGAGGAAAACACCCCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-1-2,2-2,3-2,4-2,5-2,6-2-1/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGGGAGGTTCGTTCC
R:
GGGGGTGTTTTCCTCCTCACT
Band lengths:
107-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains