HsaALTD1016373-4/6 @ hg38
Alternative 5'ss
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr9:133702916-133703701:-
Coord C1 exon
chr9:133703679-133703701
Coord A exon
chr9:133703421-133703678
Coord C2 exon
chr9:133702916-133703029
Length
258 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
ACCACGTCTTTTCTTCCCAGGTC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GTGCCGTGTCGGCAGTTAGGAGG
Seq A exon
GCAGGTGGCGGGGTGGGGGGTTGTCTGCAGGAGCAGCGGCCAGGGAGGGGCATGGGGCTGTGGGGCTGTGGGGTGTCTGATGGGGGCAGATCCCAGGGAGGCCAAGGCAGTGGCAGAAAAGCTGGACTCTGGAGCCCACGCACCTGCCTGGCTTCGTGCCACTGCCAGGTCCAGGACTTGTCTGTGCCCTTGGGCGAGATATAACTTCTCTGCGCCTCACTTTCCTCATCTGTAGAAAGGGGCACACCTGGTAGGAGT
Seq C2 exon
GTCCTCGAGTACGACTACTACGGGGCTTACGGGAGCCGCGCGCACGAGGACTACGCCTACCGCAGGCTGCTGGCAGACGAGTACACCTTCGCCTTCCCGCCCCACCACGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453-25-28,26-28,27-28,28-28,29-28,30-28-4/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains