HsaALTD1016785-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000124613 | ZNF391
Description
zinc finger protein 391 [Source:HGNC Symbol;Acc:HGNC:18779]
Coordinates
chr6:27388992-27399548:+
Coord C1 exon
chr6:27388992-27389043
Coord A exon
NA
Coord C2 exon
chr6:27399442-27399548
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
AAATCATTTCTAATCTGCAGGAA
3' ss Score
7.76
Exon sequences
Seq C1 exon
AAGTGCGGGACCCGCCCGGGGTGTGTCGGGGGTACTCGGCCGGAGGCGGCCG
Seq A exon
NA
Seq C2 exon
GAACCCCAGCATGTTAATTGAACTTGATCACCCAGTTGAAGGAAGAATAATAGTAGATGTTGGATCTTCAGGAAGCTGAAGAGGGCAGTGCCCAGAAATACCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124613-1-7,2-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTGTCGGGGGTACTC
R:
CTGCCCTCTTCAGCTTCCTGA
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains