HsaALTD1016935-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr16:57471958-57473736:-
Coord C1 exon
chr16:57473617-57473736
Coord A exon
NA
Coord C2 exon
chr16:57471958-57473495
Length
0 bp
Sequences
Splice sites
5' ss Seq
TATGCTGGT
5' ss Score
-17.12
3' ss Seq
GCCTGCTTCTGTGCCCACAGGTG
3' ss Score
11.53
Exon sequences
Seq C1 exon
CTGCTGAACAAGGGCACGGAACATTACTCGTATCCCTGCACACCCACGACCATGCTGCCGCGCAGTGCCTACTGGCACCACATCACTGGTTCCCAGAACATCGCCGAAGCCTCCAGCTAT
Seq A exon
NA
Seq C2 exon
GTGAGGGGTATGGGGCAGCCCAGGCCAGCTCGGAAACAGACCTCCTCAACAGATTCATCCTGCTAAAGCCAAAGCCCAGCCAGGGGGACAGCAGTGAGGCCAAGACCCCATCCCAGTGACCACAGTGCTGGCGAGCACCGATGACTGCTGGGGGCTGCCTGCTGCGGGGCTGGCTGCAGTGTACCGTGGACAGCCTCAGGGGGCTGTCGGCCAAGAGCCTGGAGAAAGGGAGCAAGCTGCCCCCTCCTTGCCCCCAAGGATGAGGCTGGACTGAGGCAAAGGGCTGGCCACACCACCTGAGCATGTGTGAGGGGTTGGAGCTACCGTGGGACTATATACTGTTAATGATTTTAATATATATGGCTTATGACATACTCTGTATCAATGAGATCCCCTCACCCTCACCCCATCCTTCCCCACCAATACACACAAATTTTTTAATCCCATGACCAGGCCACGGTCAAGGCTGTTTTTGAGTATGAGTGCAGTCGTGTCCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170-35-28,36-28-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGGCACCACATCACTGG
R:
GAGGAGGTCTGTTTCCGAGCT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains