HsaALTD1018074-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52256639-52261127:-
Coord C1 exon
chr15:52260902-52261127
Coord A exon
chr15:52260862-52260901
Coord C2 exon
chr15:52256639-52256720
Length
40 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTGTTTAAATTGTATTTCAGTTT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTTGCTCAGTGGCTGTGCAATCGCAAAATCGTCACAAGCTCTGAGACGGTGGTAAAACCCATGACCAGGCCTCAGGCTGTCAACGCCAGGGATGCACTGGCCAAAAAGATCTATGCTCACCTGTTCGACTTCATTGTGGAGAGAATTAACCAAGCGTTGCAGTTTTCAG
Seq A exon
GCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq C2 exon
TTTTGAAACCTTTGATGTGAACAGCTTTGAACAATTTTGCATCAATTACGCTAATGAAAAACTGCAACAACAGTTTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-23-17,24-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(20.9=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.6=28.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAAACCCATGACCAGGCC
R:
AGCTGTTCACATCAAAGGTTTCA
Band lengths:
145-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains