HsaALTD1020580-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000134779 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chr18:36800198-36805397:-
Coord C1 exon
chr18:36805374-36805397
Coord A exon
chr18:36805358-36805373
Coord C2 exon
chr18:36800198-36800311
Length
16 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
ATTAACTTCTGGGTTTGCAGCCA
3' ss Score
5.53
Exon sequences
Seq C1 exon
ACCTGGAGGACGATACACATGAAG
Seq A exon
GTAGGAAGATACCAAG
Seq C2 exon
CCAGTGATGATCAGCCAGAGAAGCCTCACTTTGACTCTCGCAGTGTGATATTTGAGCTGGATTCATGCAATGGCAGTGGGAAAGTTTGCCTTGTCTACAAAAGTGGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779-17-19,18-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAGGACGATACACATGA
R:
CAAGGCAAACTTTCCCACTGC
Band lengths:
117-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains