HsaALTD1020769-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000135218 | CD36
Description
CD36 molecule [Source:HGNC Symbol;Acc:HGNC:1663]
Coordinates
chr7:80646446-80646860:+
Coord C1 exon
chr7:80646446-80646469
Coord A exon
NA
Coord C2 exon
chr7:80646652-80646860
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
TGATCTCTTTCTAATGATAGAAC
3' ss Score
5.21
Exon sequences
Seq C1 exon
ATGACATTATTAGTTCTGCCACTG
Seq A exon
NA
Seq C2 exon
AACCAGAGCTTGTAGAAACCACTTTAATCATATCCAGGAGTTTGCAAGAAACAGGTGCTTAACACTAATTCACCTCCTGAACAAGAAAAATGGGCTGTGACCGGAACTGTGGGCTCATCGCTGGGGCTGTCATTGGTGCTGTCCTGGCTGTGTTTGGAGGTATTCTAATGCCAGTTGGAGACCTGCTTATCCAGAAGACAATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135218-47-65,48-65,49-65-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0113016=CD36=PU(14.7=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATTATTAGTTCTGCCACTG
R:
AGTTCCGGTCACAGCCCATTT
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains