HsaALTD1020795-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128891451-128891819:-
Coord C1 exon
chr7:128891646-128891819
Coord A exon
chr7:128891641-128891645
Coord C2 exon
chr7:128891451-128891533
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
ATAGCCCCTCCCTCCCCCAGGCT
3' ss Score
8.79
Exon sequences
Seq C1 exon
ACTGCATCCTGGAGGAAGAGGTGTTTGTGGACGGCGAGAGCTTCTCCCACCCCCGAGACCCCTGCCAGGAGTGCCGATGCCAGGAAGGCCATGCCCACTGCCAGCCTCGCCCCTGCCCCAGGGCCCCCTGTGCCCACCCGCTGCCTGGGACCTGCTGCCCGAACGACTGCAGCG
Seq A exon
GTGAG
Seq C2 exon
GCTGTGCCTTTGGCGGGAAAGAGTACCCCAGCGGAGCGGACTTCCCCCACCCCTCTGACCCCTGCCGTCTGTGTCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-26-27,27-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.9)
A:
NA
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGAACGACTGCAG
R:
CAGACAGCGACACAGACGG
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains