HsaALTD1021627-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000136802 | LRRC8A
Description
leucine rich repeat containing 8 family member A [Source:HGNC Symbol;Acc:HGNC:19027]
Coordinates
chr9:128882502-128886121:+
Coord C1 exon
chr9:128882502-128882909
Coord A exon
chr9:128882910-128883239
Coord C2 exon
chr9:128886015-128886121
Length
330 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CAGCTCTCGCTTCCTTGTAGGGA
3' ss Score
7.06
Exon sequences
Seq C1 exon
GTGCTTCAGAAACCAGGAGTTTCCGCCTCGGCTCCCCCATGTCCCCTTGTCATCCCCTGGGTCCCCCCAGATCCTCACCCCTCCACACACACTCTCCCGTTCCTAGAGGTTCCACCTCTGGGCTCTCTCCTTGCCATTTCTTTTTCAAAGATTTCCTTAGCTGTCTTCTCCTGAGTTCCTGGTCCCCTTCTCTTCCCTTGCACCCCTCCTTCCTATCGTTCCGATGGGGGCAGTGCCCTGACTTGGGGGCAGGATCCCCGGCTAGGCTCTTGGGGCCTTTCTGGGATGGGATATTTGGGAAGACCGGTCCGGAATCTAAGAACCCAGACCCTGTCCCAGTCCTGTGCATTCAGGTGGGCCCGAGGGCGAGGCGAGATCCAGTGAGGTCCAGGCCTGGTGCAGCCCTAG
Seq A exon
GTGAGCTGGATACCCAGCAAACTGAGCTCCCAGGCTGAAGGGGCATAGCTGGGGTCATGGAGTTCATGATGATTCTGCTGCTTTCGCTGACTGCTTCTTCCCCTTGATCTGGACCGGGGTGAACCGAGGTCTGCCGGTTCTCAGCTGTTGCGATTGTTGCCTTTTTTGGGAAGGAGGGATGGGTCGGGGGTTGTCTGGTAGCCGCCTCCTGATGGAGACTTGGCTGGAAGGGTGGGCGGTTCCTGGGTGAGCCACACTTCCACTGACTCCTCTTCCCCTGCCCTACCTCAGGAAGCCTTTTGAGAATGAGGTGTGGAGGGAGAGCACCTG
Seq C2 exon
GGAGGCAGCGTCCATGGAGCAAAAGGAATGCCAGGATCCTGCACAGGCAGACGCGGGCCAGCCTCAGCACCGACAGCCGACGCGCAGATAGCAGAGCCATCCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136802-1-4,2-4,3-4-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGTTCCTAGAGGTTCCAC
R:
TCCTGGCATTCCTTTTGCTCC
Band lengths:
350-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains