HsaALTD1021771-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124940106-124941099:-
Coord C1 exon
chr9:124940975-124941099
Coord A exon
chr9:124940840-124940974
Coord C2 exon
chr9:124940106-124940155
Length
135 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TTATCTTTGTCTTCATGCAGGAC
3' ss Score
10.56
Exon sequences
Seq C1 exon
GCGCTGGGAGACGTGCGGTTCCGGGTCGCTGCTCGGCTCGCCGGCTGGGCGGTGGGGGTTGGTGACGCGGGCCGGGGCTCACGAGAGGCCCGGGAGGCGGGGCTTTGCTGGCTTCCCAGAGAGAG
Seq A exon
GCAGGTGCGCGGGCCAGGACTCCGGGAATGCGAGCAGGCCCCTTATTCTCCCAGTGGCCTCGGTCTGTCCCCACAGCGGCCCGGTCAGGGTTGCCCGAGCCCCAAGGCGGGGGGCGGCACCGGGGTGCTGAAAGG
Seq C2 exon
GACAGAATGCTTTGACCTCCAAGCTGTTTTAAATCTAGTAGATAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-5-3,6-3,7-3,8-3-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAGACGTGCGGTT
R:
ACTAGATTTAAAACAGCTTGGAGGT
Band lengths:
162-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains