HsaALTD1022657-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169636112-169641406:+
Coord C1 exon
chr2:169636112-169636162
Coord A exon
NA
Coord C2 exon
chr2:169636413-169641406
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGA
5' ss Score
2.31
3' ss Seq
TTCTTTTTCTTATTTTTTAGGAG
3' ss Score
11.87
Exon sequences
Seq C1 exon
ATCCAGATCAAGGGATCGTTTCAGACGTAGTGAGACTCCTCCACATTGGAG
Seq A exon
NA
Seq C2 exon
GAGTGAGTTGAATGAAATAAAAGAAAATCAGAGAAGTCCAGTTAGAGTAAAAGAGAGAAAAATAACAGATCACAGGAATGTATCTGAGAGTCCAAACAGAAAAAATGAAAAGGAGAAGAAAGTTAAAGACCATAAATCTAACAGCAAAGAGAGAGACATCAGAAGAAATTCAGAAAAAGATGACAAGTATAAAAACAAAGTGAAGAAAAGGGCCAAATCTAAAAGTAGGAGTAAGAGCAAAGAGAAATCAAAGAGTAAAGAAAGAGATTCAAAACATAATAGAAATGAAGAAAAGAGGATGAGGTCAAGGAGTAAAGGAAGGGATCATGAAAATGTTAAAGAAAAAGAAAAGCAGTCTGATTCTAAAGGAAAAGATCAGGAAAGGAGTAGAAGTAAAGAGAAGTCTAAACAGTTAGAATCAAAGAGTAATGAGCATGATCACAGTAAAAGTAAGGAAAAGGATAGACGCGCACAATCCAGGAGTAGAGAATGTGATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-49-56,50-56,53-56-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGTGAGACTCCTCCACA
R:
TGGACTCTCAGATACATTCCTGTGA
Band lengths:
121-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains