HsaALTD1025206-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000144278 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr2:154317569-154396130:+
Coord C1 exon
chr2:154317569-154327288
Coord A exon
NA
Coord C2 exon
chr2:154395991-154396130
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GTTTCTCTGAAAAATTCCAGGTG
3' ss Score
6.1
Exon sequences
Seq C1 exon
AAGGACAAAAACAAAAATCATTTTTGAGAAGCATTGTCTAACACATAAAAATTAGTATCAACTAATTCTCTGCAGTAAGTTAAATTTTTCAGGTGTTGAGGTCACATTTTACAACTAAGTCATTTTGGTTCGTCCATCAGGAGTTCCTATGGATGCAAATTTGATACTTTCTGCTGGATTATTTCTTAGAGGTCTGATATGGTTAGGCTTTGTCTCCCCAACCCAGATCTCATCTTGAATTGAAATCCCTATAATCCCCACAGGTCAAGGAAGGGACCAGGTGGAGGTAATTGAATCATGGGGCAGTTTCCCCCATGCTGTTCTCACTATCACTATCCCATAATAGTGAGTGAGATCTCACGAGATCTGACGGTTTTATAAGGGGCTCTTCCTCCTTCGTTCCTTTGTTCGGCATTTCTCCTTCCTGTCGCCTTGTGAAGGTCGCCTTTGCCTTCCACCATGGTTGAAAGTTTCCTGAGGTGTGCCCAGAATGCTGAACT
Seq A exon
NA
Seq C2 exon
GTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTAAGAGAAAATCTGAAGTGTAAGCCCTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144278-36-40,37-40-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065217=Ricin_B_lectin=PU(5.7=10.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCCAGAATGCTGAACT
R:
AACGTCTTGGGATCTGGGAGT
Band lengths:
144-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains