HsaALTD1025299-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000144452 | ABCA12
Description
ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
Coordinates
chr2:214986542-214987793:-
Coord C1 exon
chr2:214987647-214987793
Coord A exon
chr2:214987638-214987646
Coord C2 exon
chr2:214986542-214986728
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAAGTCGGT
5' ss Score
-0.84
3' ss Seq
TTCCCTTGATTTCTCTCCAGGTC
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGACATACGGTATGGCAGCTCCCTGGTATTTTCCAATTCTTCCTTCCTATTGGAAGGAGCGATTTGGGTGTGCAGAGGTGAAGCCTGAGAAGAGCAATGGCCTCATGTTTACTAACATCATGATGCAGAACACCAACCCATCTGCCA
Seq A exon
GTAAGACAA
Seq C2 exon
GTCCTGAATACATGTTTTCCTCTAACATCGAGCCTGAACCTAAAGATCTCACAGTCGGGGTTGCCCTGCATGGGGTCACAAAGATCTATGGCTCAAAAGTTGCTGTTGATAACCTCAATCTGAACTTTTATGAAGGGCATATTACTTCATTGCTGGGGCCCAATGGAGCTGGGAAAACTACTACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144452-30-32,31-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(18.4=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACACCAACCCATCTGCC
R:
ATCTTTGTGACCCCATGCAGG
Band lengths:
107-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains