HsaALTD1025560-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000145244 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr4:47626405-47642049:-
Coord C1 exon
chr4:47641920-47642049
Coord A exon
NA
Coord C2 exon
chr4:47626405-47626521
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CAGTATTTGCCTTGTATCAGAGA
3' ss Score
4.26
Exon sequences
Seq C1 exon
TGACCCTCTCTATAAATGTGAACTCCTCTTCCTTTCTGATGGTTCACAGAGCTGCCACAGAACACCATGTGTGTGCAGATGGCTGGCAGGAGATATTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGG
Seq A exon
NA
Seq C2 exon
AGAACCATCTGTGACCAAATTGATACAGGAACAGGAGAAAGAGCCGCGGTGGCTGACATTACACTCCAACTGGGAGAGCCTCAATGGGACCACTTTACATGAACTTCTAGTAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145244-37-29,38-29-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(36.7=81.8)
A:
NA
C2:
PF154941=SRCR_2=FE(39.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCAAGCAGATGGGTTTA
R:
ATTGAGGCTCTCCCAGTTGGA
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains