HsaALTD1026143-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000147121 | KRBOX4
Description
KRAB box domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26007]
Coordinates
chrX:46463198-46471185:+
Coord C1 exon
chrX:46463198-46463277
Coord A exon
chrX:46463278-46463308
Coord C2 exon
chrX:46471142-46471185
Length
31 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTGTCTGTTTCTCTTTCAGATG
3' ss Score
14.34
Exon sequences
Seq C1 exon
GGTATCTAGTTGCGAAGCCAGATGTGATCTTCAGGTTGGGACCAGGTGAAGAGTCCTGGATGGCAGATGGGGGGACCCCG
Seq A exon
GTACGGACCTGTGCAGGTGAGGACAGGCCAG
Seq C2 exon
ATGTATCCATTTTTGCCTCATGTATTTTGAAGTGCTGTTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147121-17-17,18-17,19-17-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCCAGATGTGATCTTCAGG
R:
CAGCACTTCAAAATACATGAGGCA
Band lengths:
105-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains