HsaALTD1026510-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148308 | GTF3C5
Description
general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr9:133030810-133042306:+
Coord C1 exon
chr9:133030810-133030910
Coord A exon
chr9:133030911-133030950
Coord C2 exon
chr9:133042087-133042306
Length
40 bp
Sequences
Splice sites
5' ss Seq
GAGGCGAGG
5' ss Score
0.65
3' ss Seq
CTCCTTTGGCCTTGCCACAGATC
3' ss Score
8.16
Exon sequences
Seq C1 exon
CGGCGGTCGTTTTCCCGAAGACATGGGCCCTCCCATGGGCCATTTGCTCCCTGGAGGCCCTCGCGTCTTGCTGAGCCCGGGGAGTTAGGATGACGCGAGCG
Seq A exon
GTGAGGGAGCCCGGAACGATTCCTTCGCGGAACAATTGAG
Seq C2 exon
ATCTACGCAGACCCCACCAAGAGGCTGGAGCTGTACTTCCGGCCCAAGGACCCATACTGCCACCCAGTGTGCGCCAACCGCTTCAGTACCAGCAGCCTGCTGCTCCGCATCAGGAAGAGAACGAGGCGGCAGAAAGGGGTGCTGGGCACTGAGGCCCACTCCGAGGTCACATTTGACATGGAGATCCTTGGCATCATCTCCACCATTTACAAATTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148308-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(0.8=50.0)
A:
NA
C2:
PF097344=Tau95=FE(35.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCGTTTTCCCGAAGACAT
R:
GGAAGTACAGCTCCAGCCTCT
Band lengths:
138-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains