HsaALTD1026511-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148308 | GTF3C5
Description
general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr9:133031018-133042306:+
Coord C1 exon
chr9:133031018-133031107
Coord A exon
chr9:133031108-133031164
Coord C2 exon
chr9:133042087-133042306
Length
57 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
CTCCTTTGGCCTTGCCACAGATC
3' ss Score
8.16
Exon sequences
Seq C1 exon
GCGGAGGCGGCCGATTTGGGGCTGGGGGCCGCCGTCCCCGTGGAGCTGAGGCGGGAGCGACGCATGGTGTGCGTGGAGTACCCGGGAGTG
Seq A exon
GTGCGTGATGTGGCTAAGATGCTGCCGACTCTGGGCGGCGAGGAAGGCGTCTCCCGG
Seq C2 exon
ATCTACGCAGACCCCACCAAGAGGCTGGAGCTGTACTTCCGGCCCAAGGACCCATACTGCCACCCAGTGTGCGCCAACCGCTTCAGTACCAGCAGCCTGCTGCTCCGCATCAGGAAGAGAACGAGGCGGCAGAAAGGGGTGCTGGGCACTGAGGCCCACTCCGAGGTCACATTTGACATGGAGATCCTTGGCATCATCTCCACCATTTACAAATTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148308-2-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(13.5=54.9)
A:
NA
C2:
PF097344=Tau95=FE(35.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGTACCCGGGAGTG
R:
GCCTCGTTCTCTTCCTGATGC
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains