HsaALTD1026603-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr10:31495779-31502509:+
Coord C1 exon
chr10:31495779-31495838
Coord A exon
chr10:31495839-31495909
Coord C2 exon
chr10:31502348-31502509
Length
71 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
AAAGTATGCATTTTTTTTAGTAA
3' ss Score
3.89
Exon sequences
Seq C1 exon
GAAAGGAAGGGCAAGAAATCCTGGGGCCTGAAGCTCAGGCAGATGAAGCAGGATGTACAG
Seq A exon
GTACTCTGCTGCGACTTTCTTTCATACCATAGCCTTTAAAAGAAGGTCTTTGTGTCACTGATTTCGCATTT
Seq C2 exon
TAAAAGATGATGAATGCGAGTCAGATGCAGAAAATGAGCAAAACCATGATCCTAATGTTGAAGAGTTTCTACAACAACAAGACACTGCTGTCATTTTTCCTGAGGCACCTGAAGAGGACCAGAGGCAGGGCACACCAGAAGCCAGTGGTCATGATGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516-47-67,48-67-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCAAGAAATCCTGGGG
R:
CCTCTTCAGGTGCCTCAGGAA
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains