HsaALTD1026736-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000149050 | ZNF214
Description
zinc finger protein 214 [Source:HGNC Symbol;Acc:HGNC:13006]
Coordinates
chr11:7002709-7016024:-
Coord C1 exon
chr11:7012972-7016024
Coord A exon
chr11:7012953-7012971
Coord C2 exon
chr11:7002709-7002855
Length
19 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGA
5' ss Score
1.96
3' ss Seq
CTTAGATTTCTTTTTCCTAGAAA
3' ss Score
6.04
Exon sequences
Seq C1 exon
TCTGCTACTTTAGATAGTGGGAATAGGAGCCTAGGAGGGCTAGAAGCAAGGAGCCAGCAAGTCTAGACACATTCCAAAGGACATTATGCAAACCCTGCCTCAGTTTCCTTCACAACACTCAGCTTTTTCCCAACACTTACAATTTATGCTGTTTTCATGCTCTTCTTATGATGTGACTGACATTGTTTCCACTGAAAGGTGGGGTCTGTGTCCCACCCCTCTCAAATACAGCCATGGCTTGTGATTGCCTCATCAGTGGAGTACAGTAGAAGTGATAGGATGTGACCTCCAAGGCTAAGTCATAAAAACAATGCAGCTTTTGCTTGACTTTCTTTTGGGCAACTTGCACCATGCTGACAGATAGCCCCCGCCACTTGAAAGGACCACGTGGAGAAAAAACAGATCTCTCATCAACATTTAGACCAGCCTGCCAGCCATGGGAGTTAGCCACCCTGGAATTGAATCCTTCTTCTCAGTCAAGCCTTTTGATGACTGCAGAT
Seq A exon
GTAACCAACAACTTATCTT
Seq C2 exon
AAAGCCTGATCTTTGACCAGATGGCAGTAACATTTGAAGATGTGACTATTATTTTTACATGGGAGGAGTGGAAATTCCTGGATTCTTCTCAAAAAAGACTCTACAGGGAGGTCATGTGGGAGAACTACACAAATGTCATGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149050-6-5,7-5,8-5,9-5-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTAGACCAGCCTGCCAGC
R:
GCCATCTGGTCAAAGATCAGGC
Band lengths:
111-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains