HsaALTD1027654-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000152256 | PDK1
Description
pyruvate dehydrogenase kinase 1 [Source:HGNC Symbol;Acc:HGNC:8809]
Coordinates
chr2:172556565-172558849:+
Coord C1 exon
chr2:172556565-172556627
Coord A exon
chr2:172556628-172556874
Coord C2 exon
chr2:172558708-172558849
Length
247 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCCATCATGTTTGGTTTCAGGAT
3' ss Score
9.56
Exon sequences
Seq C1 exon
ATTGTTGAAAACAAACCAGCTGGGCCGCGGGACGACCTCCCGCCTCCCGGCGCACGTGTGCAG
Seq A exon
GTGCGCGCTAGGCCAGGCCCCTTCCAAGGAGTCGGACCCGGGTGGGAGGCCGAGCGTGGGCACCCCCGAGAATCGCGTTTGGATTCCGTGCAGTGATGATGAATGCCCAGTTTTGCATATGATGATTGCATAGAATTGGCGTGATAATAGGGAAGGCAGATTATAACTGGCCCAGGGTTTCTTAGAATGTTTTCCTTGCCAGTGGCTTAAAACTGTTGGCACCAACAGCACATTTCATCATCAGCAA
Seq C2 exon
GATCAGTGAATGCTTGTGAAAAGACCTCATTTATGTTTCTGCGGCAAGAGTTGCCTGTCAGACTGGCAAATATAATGAAAGAAATAAGTCTCCTTCCAGATAATCTTCTCAGGACACCATCCGTTCAATTGGTACAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152256-2-6,3-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF104364=BCDHK_Adom3=FE(78.3=100),PF104364=BCDHK_Adom3=PU(2.3=4.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAAAACAAACCAGCTGGGC
R:
TGTACCAATTGAACGGATGGTGT
Band lengths:
196-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains