HsaALTD1029933-2/5 @ hg38
Alternative 5'ss
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1073625-1079122:-
Coord C1 exon
chr17:1078814-1079122
Coord A exon
chr17:1078805-1078813
Coord C2 exon
chr17:1073625-1073677
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
CTCCCTGTCTCCCCCGACAGCTC
3' ss Score
11.68
Exon sequences
Seq C1 exon
AGCTACAAACGTGCTCCTCTTTAGGATGCCAGCAGGCTGCTGGCTCCCTCCCTCCCTACCCCTCCTCCCCTTCCCCTTCCCTCCTCTCCTCGCCACGCGCCTCCCTCCCCTCCCCCTTGCTGGAAGAGCACTCCGGAGCGGCTGCCCGATGCTGGAGTCCGTGCGGCAGCATCAGCAAGGTGGCTGAGTGGCCGGGCTGCTGGTGGGCGCCGGGGAGCCTGGAGCGATGGCTGCACGCTCCCGCCGCGGGGACAGAGGCTGCCATGGAGATTCTCCTCATTATTCGCTTCTGCTGTAACTGCACCTATG
Seq A exon
GTAACCCAG
Seq C2 exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-67-49,68-49,69-49,70-49,71-49-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(7.4=25.0)
A:
NA
C2:
PF0062115=RhoGEF=FE(31.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTGCCATGGAGATTCT
R:
GTAGGACTAGGGTGCTCCGAG
Band lengths:
107-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains