HsaALTD1029948-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000159915 | ZNF233
Description
zinc finger protein 233 [Source:HGNC Symbol;Acc:HGNC:30946]
Coordinates
chr19:44259838-44264375:+
Coord C1 exon
chr19:44259838-44259938
Coord A exon
chr19:44259939-44260002
Coord C2 exon
chr19:44264314-44264375
Length
64 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
GCTTCTTTCTCTTTTCCCAGTTC
3' ss Score
9.39
Exon sequences
Seq C1 exon
TCCGCTCGGGCATTCTGGGAAGTGTAGTGCAGAAGCCGTTGCAACCTTGTGTACTTCCGCTGCAGGAGGGCGAAGCAGCCGTCATCTATCCCCTCTGGGAG
Seq A exon
GTGAGTCAGCGCGGAACCTCTGCATCTACGGCGAGCTTTCCTGGCCTGGGCGTTGGACTCGCAG
Seq C2 exon
TTCTGCCTTCCCAGGACCCTGCCCTTCCCCAGAAGGAGCAGGAGAAAATGACCAAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159915-0-1,1-1,2-1,3-1-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTGTAGTGCAGAAGCC
R:
TTTCTCCTGCTCCTTCTGGGG
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains