HsaALTD1030154-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136331983-136334668:+
Coord C1 exon
chr9:136331983-136332170
Coord A exon
NA
Coord C2 exon
chr9:136334447-136334668
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CGCCAAGTTCCTCTGCACAGGAT
3' ss Score
4.89
Exon sequences
Seq C1 exon
GGGAGGAGGGCCTGGGGCCTGGCGATGCCATCCCCTGCTGGGGAGGGCCCGCCTCTGGCCCTGAGCTTGGCGGAGAAGGCCGTGTGCAAGGTGGTGTATGGCGCCCCCCGCCCCCGCCCGCTGCTGCTGCCCGTGGGCCTGGAGCTGTGGCTCTACGTGCAGAAGATGCGAAACCTGCAGAGGAAGAG
Seq A exon
NA
Seq C2 exon
GATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGAGGGCGAGCGTCTGTGCAAGGCGGGCGACTTCAAGACAGGCGTGGCCTTCTTTGAGGCTGCTGTGCAGGTGGGCACCGAGGACCTGAAGACACTGAGTGCCATCTACAGCCAGCTGGGCAACGCCTACTTCTACCTGAAGGAGCACGGCCGGGCGCTGGAATACCACAAGCATGACCTCCTGCTGGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360-4-2,5-2,6-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=WD(100=94.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCTCTACGTGCAGAAG
R:
ATGCTTGTGGTATTCCAGCGC
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains