HsaALTD1030171-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000160445 | ZER1
Description
zyg-11 related cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr9:128755408-128771688:-
Coord C1 exon
chr9:128771581-128771688
Coord A exon
NA
Coord C2 exon
chr9:128755408-128755659
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
GCATCTTGTCCACTCCCCAGGCA
3' ss Score
6.25
Exon sequences
Seq C1 exon
CCTCCTGAGGTGCTCTGGCCCCGGATTCTCCCGGGCTGCATTCTCTGCTCCTCCTCGCCTGCGAAGCATCACGTCCGCTTCCCGACGCTGAGGGCAGCCCCGTCCAGG
Seq A exon
NA
Seq C2 exon
GCAGTGGCTCTGCCAATGATCCTGTGAGTATTCAGGAATCACTGTTGCCCCTGGGGATCCTTGTCCTGGAGTGGCCCACCTGCTTGCCCCCAGCATGGCGTCCGACACTCCCGAGTCGCTGATGGCCCTCTGTACTGACTTCTGCTTGCGCAACCTGGATGGCACCCTGGGCTACCTGCTGGACAAGGAGACCCTGCGGCTACATCCGGACATCTTCTTGCCCAGCGAGATCTGTGACCGGCTCGTCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160445-2-6,3-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCATCACGTCCGCTTCC
R:
TCAGTACAGAGGGCCATCAGC
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains