HsaALTD1032916-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000165802 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr9:137453056-137453820:-
Coord C1 exon
chr9:137453731-137453820
Coord A exon
chr9:137453727-137453730
Coord C2 exon
chr9:137453056-137453180
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCCC
5' ss Score
1.84
3' ss Seq
GTGACCCTCTTGCTTCCCAGGCA
3' ss Score
9.07
Exon sequences
Seq C1 exon
CGTTCGCTGAGCGGCGCGAGCGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCCATGAAAGCCGACACTTCCCACGACTCCCGAGACA
Seq A exon
GTAG
Seq C2 exon
GCAGTGACCTGCAGAGCTCCCACTGCACGCTGGACGAGGCCTTCGAGGACCTGGACTGGGACACTGAGAAGGGCCTGGAGGCTGTGGCCTGCGACACCGAAGGCTTCGTGCCACCAAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-19-23,20-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.084
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAGCCGACACTTCCCAC
R:
TTCTCAGTGTCCCAGTCCAGG
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains