HsaALTD1032931-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000165816 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr10:114239469-114248765:+
Coord C1 exon
chr10:114239469-114239569
Coord A exon
NA
Coord C2 exon
chr10:114248704-114248765
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTTTTCCTGTGTCCCTGTAGTTA
3' ss Score
10.52
Exon sequences
Seq C1 exon
CGCCCCTCCTGTGATCCCGTAGCGCCCCCTGGCCCGAGCCGCGCCCGGGTCTGTGAGTAGAGCCGCCCGGGCACCGAGCGCTGGTCGCCGCTCTCCTTCCG
Seq A exon
NA
Seq C2 exon
TTATATCAACATGCCCCCTTTCCTGTTGCTGGAAGCCGTCTGTGTTTTCCTGTTTTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165816-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains