HsaALTD1033293-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8839310-8870917:-
Coord C1 exon
chr11:8870835-8870917
Coord A exon
NA
Coord C2 exon
chr11:8839310-8839350
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CCTTTCCACTCTTTTCACAGATT
3' ss Score
10.82
Exon sequences
Seq C1 exon
GTGCGCGCCCGGTCCCGCCCCTGCCCTCCCAGCCCTTTTCCCTCTGCTCCCGACTCCCGGCCCCGGCAGCGGTGTCCAGCTCC
Seq A exon
NA
Seq C2 exon
ATTTCACACCCTTTGGAGAGTTTCTTTCTTGGATAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-8-19,9-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCAGCCCTTTTCCCTC
R:
TCCAAGAAAGAAACTCTCCAAAGGG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains