HsaALTD1034121-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr17:76022189-76022532:-
Coord C1 exon
chr17:76022413-76022532
Coord A exon
chr17:76022409-76022412
Coord C2 exon
chr17:76022189-76022227
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
TCTCCCCTTGGTCGAGGCAGGAT
3' ss Score
1.78
Exon sequences
Seq C1 exon
GTCTGCGCAGGCCAGTACGGGCCGGGCATGGCGGAGCTGGAGCAACAGATCGCCGAGCACAACATCCTGCAGAAGGAGATCGACGCCTATGGGCAGCAGCTGCGGAGCCTCGTGGGGCCG
Seq A exon
GTAG
Seq C2 exon
GATGCAGCCACCATCCGGAGCCAATACCGAGACCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-5-7,6-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCACAACATCCTGCAGAA
R:
TAGGTCTCGGTATTGGCTCCG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains