HsaALTD1035021-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000169740 | ZNF32
Description
zinc finger protein 32 [Source:HGNC Symbol;Acc:HGNC:13095]
Coordinates
chr10:43646064-43648704:-
Coord C1 exon
chr10:43648636-43648704
Coord A exon
NA
Coord C2 exon
chr10:43646064-43646202
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGC
5' ss Score
3.97
3' ss Seq
TGTTTGTTTTTCTCCCTCAGGTG
3' ss Score
12.45
Exon sequences
Seq C1 exon
GCGGCCGCCAAGGAAATGAGCAGGCCTGGCCGGCCCGGGCCCCGAGGGAGGCCAGCCGCGAGCGGAGAG
Seq A exon
NA
Seq C2 exon
GTGCTCAGGAACAGCCCATGGAAGAATCATATGAAGAGGTGGTGACTGAGGTCGTAAGCAGGAGTGGACATGTTTGGATTTCCAACAGCTACCCTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAGCGTTCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169740-1-4,2-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAAATGAGCAGGCCTGG
R:
CCAAACATGTCCACTCCTGCT
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains