HsaALTD1035866-2/2 @ hg38

Alternative 5'ss

Gene

ENSG00000171827 | ZNF570

Description

zinc finger protein 570 [Source:HGNC Symbol;Acc:HGNC:26416]

Coordinates

chr19:37476339-37485320:+

Coord C1 exon

chr19:37476339-37476434

Coord A exon

chr19:37476435-37476493

Coord C2 exon

chr19:37483879-37485320

Length

59 bp

Sequences

Splice sites

5' ss Seq

AAGGTATCA

5' ss Score

7.22

3' ss Seq

TTCTTATTATTACTTTTCAGGCT

3' ss Score

8.7

Exon sequences

Seq C1 exon

GACTTTGCTTTTCCAAACCAAGTGTGATATTATTGTTGGAACAAGGAAAAGCACCCTGGATGGTGAAGAGAGAGCTGACAAAAGGCTTGTGCTCAG

Seq A exon

GTTAGTGAAGAGGAAATTGGCAAAAATCTTTGCACGTGACAGCTCAGCTTGACTCAAAG

Seq C2 exon

GCTGGGAGCCTATATGTGAGACTGAAGAATTAACCCCAAAGCAGGATTTTTATGAAGAACATCAATCCCAGAAGATAATAGAAACACTTACAAGCTATAACCTTGAATACTCCAGTTTGAGAGAAGAGTGGAAATGTGAGGGCTATTTTGAAAGGCAACCAGGTAATCAGAAGGCGTGTTTCAAGGAAGAGATAATCACTCATGAAGAACCCCTTTTTGATGAGAGAGAACAAGAATATAAATCTTGGGGAAGTTTTCATCAGAACCCACTGCTTTGTACACAAAAGATAATCCCCAAAGAGGAGAAAGTACATAAACATGACACACAAAAGAGAAGCTTTAAAAAAAATTTAATGGCTATTAAGCCCAAGAGTGTCTGTGCAGAGAAGAAACTTTTGAAATGTAATGACTGTGAAAAAGTCTTCAGCCAGAGTTCATCCCTTACTCTTCATCAAAGAATTCATACTGGAGAGAAACCCTATAAATGTATAGAGTGTGGA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000171827-10-14,11-14-2/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref, Alt. Stop)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.084

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)

Main Inclusion Isoform:

ENSP00000466484