HsaALTD1036137-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000172466 | ZNF24
Description
zinc finger protein 24 [Source:HGNC Symbol;Acc:HGNC:13032]
Coordinates
chr18:35340231-35344456:-
Coord C1 exon
chr18:35344370-35344456
Coord A exon
chr18:35344360-35344369
Coord C2 exon
chr18:35340231-35340733
Length
10 bp
Sequences
Splice sites
5' ss Seq
CCGGTGTGC
5' ss Score
4.89
3' ss Seq
TTTTATTTCTTATGCCTCAGGAG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GCGCCGGGGGCTTCTGGGAAAAGGCTTGTGAACGGCGTTTCTGCGTCTGCCGTGGACAGCGAAGCTGCTGCGGTTCCTGAGCCGGAG
Seq A exon
GTTTGCGCCG
Seq C2 exon
GAGTGCCTGTGAAGAAAACGGGGTATTGCCCTGAGGCTTATATTCTGCCTCAGTTGTCTTTTCTTGAAATATTATAAATCAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTCTGAGAGTGAAGTTGGAGGAGGATCCTGATGGCGAAGAGGGATCAAGTATCCCCTGGAACCATCTCCCAGACCCAGAGATTTTCCGACAGCGATTCAGGCAGTTTGGATACCAGGATTCACCTGGGCCCCGTGAGGCTGTGAGCCAGCTCCGAGAACTTTGCCGTCTGTGGCTCAGGCCAGAGACGCACACAAAAGAACAAATCTTGGAGCTGGTAGTGCTGGAGCAGTTTGTTGCCATCCTACCCAAAGAGCTACAGACTTGGGTTCGAGATCATCATCCAGAGAATGGAGAGGAGGCAGTGACAGTGCTGGAGGATTTGGAGAGTGAACTTGATGACCCTGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172466-2-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.407
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCTGGGAAAAGGCTTGT
R:
CCCGTTTTCTTCACAGGCACT
Band lengths:
101-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains