HsaALTD1036318-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000172878 | METAP1D
Description
methionyl aminopeptidase type 1D, mitochondrial [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr2:172063720-172065752:+
Coord C1 exon
chr2:172063720-172063860
Coord A exon
chr2:172063861-172063946
Coord C2 exon
chr2:172065604-172065752
Length
86 bp
Sequences
Splice sites
5' ss Seq
TAGGTTGAC
5' ss Score
-3.13
3' ss Seq
TTCTTTATTTAACATTTTAGGTT
3' ss Score
9.96
Exon sequences
Seq C1 exon
AAGCCAGACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACAGCATAGAAGTTAAGAATGAAGATCAGATTCAAGGGCTTCATCAGGCTTGTCAGCTGGCCCGCCACGTCCTCCTCTTGGCTGGGAAGAGTTTAAAG
Seq A exon
GTGGCGTCTCACCAAGCCTCAGAACGACTTACATAAGGGGCAACAAACACTCCTCTTTTTTTCCTTCTCCTTAACTCTTCTTTTAG
Seq C2 exon
GTTGACATGACAACTGAAGAGATAGATGCTCTTGTTCATCGGGAAATCATCAGTCATAATGCCTATCCCTCACCTCTAGGCTATGGAGGTTTTCCAAAATCTGTTTGTACCTCTGTAAACAACGTGCTCTGTCATGGTATTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172878-14-12,15-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(13.3=42.0)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTCTTGGCTGGGAAG
R:
ACCATGACAGAGCACGTTGTT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains