HsaALTD1036499-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000173275 | ZNF449
Description
zinc finger protein 449 [Source:HGNC Symbol;Acc:HGNC:21039]
Coordinates
chrX:135348754-135349314:+
Coord C1 exon
chrX:135348754-135348837
Coord A exon
chrX:135348838-135348884
Coord C2 exon
chrX:135349110-135349314
Length
47 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
GGTTCTGGCATTTCCCCCAGGTT
3' ss Score
8.3
Exon sequences
Seq C1 exon
ACATTTGCTGCTGAATACAGTCACTACTAGTCATGTACAGCTCTTGAGCCCTTGAAATATGGCCAATACAAATTGAGATCTGCT
Seq A exon
GTAAGTATGAAATACACACCACATGCAGAAGACTTGGTATGAAAAAA
Seq C2 exon
GTTGATATGCATGACATGCTCTTGGAAGAACTGGCACCAGTGGGAACGGCACACATACCACCAACCATGCACCTAGAGTCACCTGCACTCCAGGTAATGGGACCTGCCCAGGAGGCCCCAGTAGCAGAGGCATGGATCCCACAGGCAGGGCCACCGGAGCTGAACTATGGTGCTACTGGAGAATGTCAGAACTTTCTGGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173275-5-7,6-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.435
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGTACAGCTCTTGAGCCC
R:
GGAGTGCAGGTGACTCTAGGT
Band lengths:
146-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains