HsaALTD1036705-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel subfamily H member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr17:63545846-63548977:+
Coord C1 exon
chr17:63545846-63545936
Coord A exon
chr17:63545937-63545945
Coord C2 exon
chr17:63548802-63548977
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTAAACTTTCCTCCTTACAGGGG
3' ss Score
10.93
Exon sequences
Seq C1 exon
CTGGACTTCCAGAGACATGGCTCAGATCCTGGATTTGCAGGGAGTTGGGGCCACTGAACTCCAAGATAAAGACACCATGAGGGGACTGAAG
Seq A exon
GTGGGCAAG
Seq C2 exon
GGGATTTCCTTTAGCTGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAAGCAAGAGAATCACTTGAACCCTAAAGGCAGAGGTTGCAGTGAGCCGAGATAGTGCCACTGCACTACAGCCCGGGCGACAGAGTGAGACTCCATCTCAAAAATAAAATAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826-22-33,23-33-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACCATGAGGGGACTGAA
R:
TCTCTTGCTTCAGCCTCCTGA
Band lengths:
93-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains