HsaALTD1036926-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000174501 | ANKRD36C
Description
ankyrin repeat domain 36C [Source:HGNC Symbol;Acc:HGNC:32946]
Coordinates
chr2:95851694-95852196:-
Coord C1 exon
chr2:95852139-95852196
Coord A exon
chr2:95852126-95852138
Coord C2 exon
chr2:95851694-95851787
Length
13 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TTTTAAAATGCACATTTTAGGCT
3' ss Score
4.8
Exon sequences
Seq C1 exon
TTTCAAGAAATACAGGATCAACTTACAGCTACTATAAGATGTACTAAGGAGATGGAAG
Seq A exon
GCGACGCACAAAA
Seq C2 exon
GCTTGAAGTAGAAAATGTCATGATGAGAAAAATTATTAAAAAACAGGATGAACAAATTGAGCGGTTTGAGAAAATCCTGCAGCATTCAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174501-123-126,124-126,125-126,126-126-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCAACTTACAGCTACTATAAGA
R:
CGCTCAATTTGTTCATCCTGT
Band lengths:
108-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains