HsaALTD1037488-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000176371 | ZSCAN2
Description
zinc finger and SCAN domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20994]
Coordinates
chr15:84601035-84604200:+
Coord C1 exon
chr15:84601035-84601135
Coord A exon
chr15:84601136-84601188
Coord C2 exon
chr15:84603820-84604200
Length
53 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTCTCTTTTTTGTTTCTCAGCGG
3' ss Score
9.57
Exon sequences
Seq C1 exon
CCACGGGCTTGAGCCGGGGTGAATCTGGAGGGGCCGGGCCGAGCCCGGGGGCGCTTTCGCACGCGAAGCAACCGCTAGAGCAGGACCTGGTCTCCCGAGAG
Seq A exon
GTGAGCCGGAGAGGCAGGCCTGGAGCCACGCGGACCCCGGGCAGTAGCCCGAG
Seq C2 exon
CGGGACTACTTGTTGATATTTGAGGAGGGAAGTGTCTTACCTGAGAGCCTGGCTGGAGAAGACTGAGGTCCAAGGCTTGAAGCCTAAGTGATTGCCCCAGGACTGTGGATGATGGCTGCAGACATCCCGAGAGTGACCACTCCGCTGAGCTCCTTGGTCCAGGTGCCTCAAGAGGAAGATAGACAGGAGGAGGAGGTCACCACCATGATCCTGGAGGATGACTCCTGGGTGCAAGAAGCTGTGCTGCAGGAGGATGGCCCTGAGTCTGAGCCCTTTCCCCAGAGTGCTGGCAAGGGCGGCCCCCAGGAGGAGGTGACCAGGGGACCACAGGGTGCACTCGGCCGCCTCCGAGAGCTCTGCCGGCGCTGGCTGAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176371-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.815
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.5=62.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGCCGGGGTGAATCTG
R:
AGCCAGGCTCTCAGGTAAGAC
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains