HsaALTD1037642-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000177025 | C19orf18
Description
chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:HGNC:28642]
Coordinates
chr19:57958437-57961551:-
Coord C1 exon
chr19:57961451-57961551
Coord A exon
NA
Coord C2 exon
chr19:57958437-57958717
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACATCATTTCTACATTTTAGTTA
3' ss Score
6.85
Exon sequences
Seq C1 exon
TCGACTGGCACAGGCTGAGGAAAGACAACAGCTCGAGTCACTTTATAAGAACCTCAGGATACCGTTATTAGGAGATGAAGAAGAGGGCTCAGAGGACGAGG
Seq A exon
NA
Seq C2 exon
TTATTATATCAAAAAGAAGCAAAAATATTAAGAAGAAACTGAAGGAAGAGCAAAACTCAGTAACAGAAAACAAAACAAAGAATGCGTCACATAATGGAAAAATGGAAGACTTGTGAACGCAGACGACAGAGGTGCCGGCTGAGGCAGAGGAGAAACTATGGGGGTGCTGGGAGACTGAGCCTGTGGGCGTGGCTTGCTCCCAGAGAACCTTATGGAAGAGGACATCAAAGAAAGAAATGCCAGACCTGTATCCCAGAAAATAAAGCCACATGATATAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177025-11-9,12-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=NA C2=0.684
Domain overlap (PFAM):
C1:
PF097165=ETRAMP=PD(4.7=10.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAGGGCTCAGAGGACG
R:
GTCTGCGTTCACAAGTCTTCCA
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains